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Showing posts from April, 2018

Note for: Ring finger protein 43 expression is associated with genetic alteration status and poor prognosis among patients with intrahepatic cholangiocarcinoma

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Paper: Ring finger protein 43 expression is associated with genetic alteration status and poor prognosis among patients with intrahepatic cholangiocarcinoma (doi: 10.1016/j.humpath.2015.12.027) Marks -- P < .05, considered statistically significant (even for Kaplan-Meier analysis) Abstract; RNF43-- 1.central maintenance of genome integrity 2.cellular homeostasis Ring finger ligases -- involve in malignancy RNF43 -- frequently mutated in many type of malignancy (ICC is part of this malignancy) Gap; Expression level of RNF43 in ICC never been observed Purposed; 1.Investigate expression level in ICC 2.Identify RNF43 polymorphisms in ICC tissues 3.Observe correlation between RNF43 expression vs RNF43 mutation/polymorphisms, clinicopathological features and prognosis Finding; 1.RNF43 low correlated with rs2257205 and RNF43-somatic mutations 2.down reg of RNF43 (both protein and mRNA level) related to overall survival poor (meaning RNF43 could play role as tumor suppressor) 3...

Numbers and Genetics (will update time to time)

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Human genome; 1. ~3,000*10^6 bases (just remember that it is around 1 CD capacity - 3-4GB) 2. ~20,000 Protein coding genes 3. ~1% of genome --Protein coding exons human SNP; bases change in every 1000 bases therefore, human SNPs (3000*10^6)/1000 = 3 millions (3*10^6) Genome different within the species (except twins) 99.9% identical PS.There is a group of people interested in the same thing; http://book.bionumbers.org/ https://bionumbers.hms.harvard.edu/search.aspx -- Prefix for number Ref: https://en.wikipedia.org/wiki/Metric_prefix